RPSBLAST Web Interface
Program:
RPSBLAST (Protein Motif)
Target:
TIGR database of Pfam (TIGRFAM)
Simple Modular Architechture Research Tool (SMART)
Protein families (Pfam)
Clusters of Orthologous Groups (COGs)
Eukaryotic counterpart to COGs (KOGs)
Protein clusters (PRK)
Entrez Conserved Domain Database NCBI (CDD_NCBI)
Conserved Domain Database (CDD)
Query (FASTA format):
Filter low-complexity region
0.0001
0.001
0.01
0.1
1
10
100
1000
Expectation value (E)
Number of one-line descriptions to show
5
10
25
50
100
500
1000
Number of alignments to show
5
10
25
50
100
500
1000
Optional databases are available from:
ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/
README
CDD info.
