Multiple-alignment by ClustalW2.1
Sequence Type :
PROTEIN
DNA
- Protein Weight Matrix :
BLOSUM
GONNET
PAM
ID
- DNA Weight Matrix :
IUB
CLUSTALW
- DNA Transitions Weight :
: default = 0.5
Align. Word Width :
60
90
120
150
Gap Opening Penalty :
: default = 10
Gap Extension Penalty :
: default = 0.2
Delay Divergent Sequences (%) :
: default = 30
List Hydrophilic Residues :
: default = GPSNDQEKR
Gap Separation Pen. Range :
: default = 4
Toggle End Gap Separation :
OFF
ON
Output File Format :
Normal
GCG
GDE
NBRF-PIR
PHYLIP
NEXUS
FASTA
Bootstrap :
(>4 seq.)
OFF
ON
Bootstrap Number :
: default = 1000 (max. 10000)
Seed Number for Bootstraps :
: default = 111 (max. 1000)
Output format :
Phylip (default)
NJ
NEXUS
Sequence Data
(multi-fasta file) :
*